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	<title>Comments on: 1 transistor per neuron recording device</title>
	<atom:link href="http://neurodudes.com/2006/06/04/sciencedaily-semiconductor-brain-nerve-tissue-interfaced-with-a-computer-chip/feed/" rel="self" type="application/rss+xml" />
	<link>http://neurodudes.com/2006/06/04/sciencedaily-semiconductor-brain-nerve-tissue-interfaced-with-a-computer-chip/</link>
	<description>at the intersection of neuroscience and AI.</description>
	<pubDate>Sat, 06 Sep 2008 02:50:27 +0000</pubDate>
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		<title>By: BiPolar Disorder blog</title>
		<link>http://neurodudes.com/2006/06/04/sciencedaily-semiconductor-brain-nerve-tissue-interfaced-with-a-computer-chip/#comment-749606</link>
		<dc:creator>BiPolar Disorder blog</dc:creator>
		<pubDate>Sun, 09 Mar 2008 18:00:02 +0000</pubDate>
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		<description>&lt;strong&gt;BiPolar Information &lt;/strong&gt;

Information on BiPolar Disorder</description>
		<content:encoded><![CDATA[<p><strong>BiPolar Information </strong></p>
<p>Information on BiPolar Disorder</p>
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		<title>By: Neville</title>
		<link>http://neurodudes.com/2006/06/04/sciencedaily-semiconductor-brain-nerve-tissue-interfaced-with-a-computer-chip/#comment-4202</link>
		<dc:creator>Neville</dc:creator>
		<pubDate>Sat, 10 Jun 2006 08:52:10 +0000</pubDate>
		<guid isPermaLink="false">http://neurodudes.com/2006/06/04/sciencedaily-semiconductor-brain-nerve-tissue-interfaced-with-a-computer-chip/#comment-4202</guid>
		<description>I've been discussing this device a bit more with my friend Alex Shalek, a fabrication guy also doing work with neural recording devices. Here's some of our discussion about potential limitations of the technique, which I've posted in its original dialogue format.

Alex:
&#62; &#62;&#62;&#62;Yep, I know the work well ... it's a really cool idea with a couple
&#62; &#62;&#62;&#62;limitations at present ... primarily, the heterogeneous distribution of
&#62; &#62;&#62;&#62;ion channels present across a neuron makes it hard to interpert signals
&#62; &#62;&#62;&#62;(e.g., you might have capacitive coupling or a leak current or anything).
&#62; &#62;&#62;&#62;The videos are cool as well - anyway, it would be better if they could
&#62; &#62;&#62;&#62;make an array of eos-fets rather then via-ed mosfets but they're harder to
&#62; &#62;&#62;&#62;scale ... enjoy your retreat and let me know about the cells ... I
&#62; &#62;&#62;&#62;appreciate everything,

Me:
&#62; &#62;&#62;Alex,
&#62; &#62;&#62;
&#62; &#62;&#62;Thanks for the interesting stuff to think about. Is the heterogeneity
&#62; &#62;&#62;really an
&#62; &#62;&#62;issue? Are the MOSFETs really limited to sensing such a small area that they
&#62; &#62;&#62;would be susceptible to ion channel inhomogeneities? (I'm thinking of the FETs
&#62; &#62;&#62;as really tiny bipolar electrodes here, which I think it correct...) Are the
&#62; &#62;&#62;source and base terminals for each FET very close together in a chip
&#62; &#62;&#62;like this?

Alex:
&#62; &#62; Hey Neville,
&#62; &#62;
&#62; &#62; So, in short, the answer is yes - some of their older papers document this
&#62; &#62; well ... If you compare a patch recording (x) with what the FET sees (y),
&#62; &#62; sometimes x=y, sometimes dx/dt = y, sometimes -dx/dt = y, and everything
&#62; &#62; in between.  The real issue arises from the manner in which the FETs are
&#62; &#62; gated - basically, you're using gradients in the ion concentration as the
&#62; &#62; gating mechanism ... if you have a distribution, and those channels have
&#62; &#62; different polarities and opening times, it becomes very hard to figure
&#62; &#62; out what's going on ... and even without ion channels, you can get a
&#62; &#62; capacitive signal from the membrane.  In CMOS, there's only one carrier
&#62; &#62; (the electron), here everything is much more complicated ... finally, to
&#62; &#62; help you think about size, remember that the FETs are at 7 um pitch -
&#62; &#62; that means that within 7 um, you have a source, a gate, and a drain for
&#62; &#62; the FET and a spacer area (between it and the adjacent FET) ... this
&#62; &#62; means that the gate is relatively small ... I hope this helps,

Me:
&#62;&#62; I see what you mean... I can imagine that the terminals
&#62;&#62; could be small enough that you would have issues with
&#62;&#62; spatial inhomogeneity. I guess the best solution would be to
&#62;&#62; pack the chip at an even higher density. Then, you'd hope
&#62;&#62; that certain spatially continguous sets of FETs covary
&#62;&#62; together enough that you'd believe that they were controlled
&#62;&#62; by a single cell...

Alex:
&#62; Neville,
&#62;
&#62; I should point out that it's a brilliant idea - it just hasn't proven
&#62; itself yet ... you're right about generating algorithms to interpret the
&#62; data - the big problem then is the size of the data stream - 2khz*10^4
&#62; transitors*experiment time = a lot of data to store and then correlate
&#62; and then analyze ... it's daunting to say the least ... we thought about
&#62; modifying Fromherz's FET design originally (and probably will do something
&#62; like it in the not so distant future), but opted not to based on the fact
&#62; that, for large data sets, you want to be positive from which neuron
&#62; you're recording ... also, we wanted to study intrinsic changes (e.g.,
&#62; resting membrane potential) ...</description>
		<content:encoded><![CDATA[<p>I&#8217;ve been discussing this device a bit more with my friend Alex Shalek, a fabrication guy also doing work with neural recording devices. Here&#8217;s some of our discussion about potential limitations of the technique, which I&#8217;ve posted in its original dialogue format.</p>
<p>Alex:<br />
&gt; &gt;&gt;&gt;Yep, I know the work well &#8230; it&#8217;s a really cool idea with a couple<br />
&gt; &gt;&gt;&gt;limitations at present &#8230; primarily, the heterogeneous distribution of<br />
&gt; &gt;&gt;&gt;ion channels present across a neuron makes it hard to interpert signals<br />
&gt; &gt;&gt;&gt;(e.g., you might have capacitive coupling or a leak current or anything).<br />
&gt; &gt;&gt;&gt;The videos are cool as well - anyway, it would be better if they could<br />
&gt; &gt;&gt;&gt;make an array of eos-fets rather then via-ed mosfets but they&#8217;re harder to<br />
&gt; &gt;&gt;&gt;scale &#8230; enjoy your retreat and let me know about the cells &#8230; I<br />
&gt; &gt;&gt;&gt;appreciate everything,</p>
<p>Me:<br />
&gt; &gt;&gt;Alex,<br />
&gt; &gt;&gt;<br />
&gt; &gt;&gt;Thanks for the interesting stuff to think about. Is the heterogeneity<br />
&gt; &gt;&gt;really an<br />
&gt; &gt;&gt;issue? Are the MOSFETs really limited to sensing such a small area that they<br />
&gt; &gt;&gt;would be susceptible to ion channel inhomogeneities? (I&#8217;m thinking of the FETs<br />
&gt; &gt;&gt;as really tiny bipolar electrodes here, which I think it correct&#8230;) Are the<br />
&gt; &gt;&gt;source and base terminals for each FET very close together in a chip<br />
&gt; &gt;&gt;like this?</p>
<p>Alex:<br />
&gt; &gt; Hey Neville,<br />
&gt; &gt;<br />
&gt; &gt; So, in short, the answer is yes - some of their older papers document this<br />
&gt; &gt; well &#8230; If you compare a patch recording (x) with what the FET sees (y),<br />
&gt; &gt; sometimes x=y, sometimes dx/dt = y, sometimes -dx/dt = y, and everything<br />
&gt; &gt; in between.  The real issue arises from the manner in which the FETs are<br />
&gt; &gt; gated - basically, you&#8217;re using gradients in the ion concentration as the<br />
&gt; &gt; gating mechanism &#8230; if you have a distribution, and those channels have<br />
&gt; &gt; different polarities and opening times, it becomes very hard to figure<br />
&gt; &gt; out what&#8217;s going on &#8230; and even without ion channels, you can get a<br />
&gt; &gt; capacitive signal from the membrane.  In CMOS, there&#8217;s only one carrier<br />
&gt; &gt; (the electron), here everything is much more complicated &#8230; finally, to<br />
&gt; &gt; help you think about size, remember that the FETs are at 7 um pitch -<br />
&gt; &gt; that means that within 7 um, you have a source, a gate, and a drain for<br />
&gt; &gt; the FET and a spacer area (between it and the adjacent FET) &#8230; this<br />
&gt; &gt; means that the gate is relatively small &#8230; I hope this helps,</p>
<p>Me:<br />
&gt;&gt; I see what you mean&#8230; I can imagine that the terminals<br />
&gt;&gt; could be small enough that you would have issues with<br />
&gt;&gt; spatial inhomogeneity. I guess the best solution would be to<br />
&gt;&gt; pack the chip at an even higher density. Then, you&#8217;d hope<br />
&gt;&gt; that certain spatially continguous sets of FETs covary<br />
&gt;&gt; together enough that you&#8217;d believe that they were controlled<br />
&gt;&gt; by a single cell&#8230;</p>
<p>Alex:<br />
&gt; Neville,<br />
&gt;<br />
&gt; I should point out that it&#8217;s a brilliant idea - it just hasn&#8217;t proven<br />
&gt; itself yet &#8230; you&#8217;re right about generating algorithms to interpret the<br />
&gt; data - the big problem then is the size of the data stream - 2khz*10^4<br />
&gt; transitors*experiment time = a lot of data to store and then correlate<br />
&gt; and then analyze &#8230; it&#8217;s daunting to say the least &#8230; we thought about<br />
&gt; modifying Fromherz&#8217;s FET design originally (and probably will do something<br />
&gt; like it in the not so distant future), but opted not to based on the fact<br />
&gt; that, for large data sets, you want to be positive from which neuron<br />
&gt; you&#8217;re recording &#8230; also, we wanted to study intrinsic changes (e.g.,<br />
&gt; resting membrane potential) &#8230;</p>
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		<title>By: Zack Lynch</title>
		<link>http://neurodudes.com/2006/06/04/sciencedaily-semiconductor-brain-nerve-tissue-interfaced-with-a-computer-chip/#comment-4188</link>
		<dc:creator>Zack Lynch</dc:creator>
		<pubDate>Fri, 09 Jun 2006 15:47:23 +0000</pubDate>
		<guid isPermaLink="false">http://neurodudes.com/2006/06/04/sciencedaily-semiconductor-brain-nerve-tissue-interfaced-with-a-computer-chip/#comment-4188</guid>
		<description>This is quite a impressive development indeed.  It looks like extracellular resolution will increase in a Moore's law like fashion in the coming years, but this still leaves the complexity of the intracellular matrix a relative black box.  Until that is figured out in more detail the development of a "functional" hippocampal neuroprosthetic will remain very difficult.</description>
		<content:encoded><![CDATA[<p>This is quite a impressive development indeed.  It looks like extracellular resolution will increase in a Moore&#8217;s law like fashion in the coming years, but this still leaves the complexity of the intracellular matrix a relative black box.  Until that is figured out in more detail the development of a &#8220;functional&#8221; hippocampal neuroprosthetic will remain very difficult.</p>
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