Archive for the ‘Biological computation (in non-neural systems)’ Category

DNA and Molecular Computation

Thursday, August 26th, 2004

almost offtopic, but neat; here’s a course on “DNA and Molecular Computation”, with a list of papers such as “Chemical Kinetics is Turing Universal”. I didn’t know so much work had been done on this stuff already! cool!

http://www.cs.caltech.edu/courses/cns288/

(btw, if you’re interested in reading one of the actual articles, here’s Chemical implementation of finite-state machines, which goes into more (computational) detail than “Chemical Kinetics is Turing Universal” actually does).

Neuromorphic Engineering newsletter

Tuesday, March 16th, 2004

interesting research summaries of recent research in neuromorphic engineering: here’s a link to the newsletter.

Registry of standard biological parts

Tuesday, February 17th, 2004

Today, I attended an interesting CBA talk on the MIT Registry of Standard Biological Parts. The basic premise is that molecular biology has elucidated enough about particular genes, proteins, promoters, etc. that we can start to make an inventory of these various “parts”. More than just a database, the Registry promotes the idea of reliable engineering with combinable components (think resistors and capacitors put together into larger circuits). This all sounds very ambitious and a bit idealized (especially if you’re a biologist) until you realize that they’ve actually done this already and built some neat, complex things (like a synchronized oscillator and a bullseye).

Though not directly related to neuroscience, this combination of biology and computation is very interesting. I encourage all of you to check out parts.mit.edu. It looks like they’re trying to make it as open source as possible, too.

For discussion: Is this the right approach to engineering with biology? What can be made more easily with biological substrates than with silicon?

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